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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for … these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest for … sequence and then analyze the genomes and multi-omics datasets for algae that can be used for large-scale …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … that showcase our collaborations and capabilities to enable great science that will help solve energy and … on Phytozome … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … Fungal Datasets …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Gardeners and farmers around the country recognize that crop varieties … best in certain regions. Most plant species have adapted to their local environments; for example, crop and … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of … chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … carbon and mitigating greenhouse gas emissions, and understanding how to improve soil health can help mitigate …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint … projects such as Expression Atlas and PPRD could help with understanding gene functional roles, but the experimental … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* …     2,140     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … , another species of Miscanthus that was sequenced. Understanding the evolution of polyploidy, and how genomes … sinensis genome … CABBI Sequences Miscanthus Genome … Datasets … From our partners …
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JGI at the AGU Fall Meeting
… the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some … unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating … of nitrous oxide pulses in rewetted forest soils: An integrated -omic and isotopic approach” 12:39pm Convention …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Gut Fungi: Unexpected Source of Novel Chemicals
… from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, … Laboratory. More recently, O’Malley’s team has begun to understand the outsized role the fungi play in digesting …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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