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Gotta Catch 'Em Gall
… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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Jasmyn Pangilinan
… provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she works to develop and …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … at Lawrence Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …
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When “The Blob” Made It Hotter Under the Water
… carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From … going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can … amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE mission, … At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … the Olpidium genome data . Taking the advantage of rapid development of binning methods, we were able to recover …
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in the mix. … be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied …
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10 From JGI on the 2019 Highly Cited Researchers List
… of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology … gradient across the United States. Go here to learn more about the project . Igor Grigoriev and Asaf Salamov were …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a … systems. The foundational studies enabled contribute to the development of bio-based products and next-generation … He studies fungal biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He …
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