Results

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and … from the data yet? Are there any specific examples you can share? Avinash: Yes, I will mention two here. The main …
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Busting the Unbreakable Lignin
… the remaining components into  biofuels and bioproducts. If anaerobic fungi could be used to effectively modify … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living organism. First … superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most …
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Disclaimer
… or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would … rights. … Reference herein to any specific commercial products, process, or service by trade name, trademark, … any statement of authorship are reproduced on all copies. JGI is not responsible for the contents of any off-site …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to their environments, two gene families—peroxidases and nucleotide-binding leucine-rich repeats (NLRs) —stood out for …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene … Editorial board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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Accelerating Metagenomics Discoveries with Deep Learning
National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims …
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