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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … author on the paper and computational biologist at the JGI. “We had to work really hard to make them work for the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in … uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon … Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the … has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, …
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Learning to Look
… Machine learning approach significantly expands inovirus … Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or a cane, but only … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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