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Dynamic reworking of marine diatom endometabolomes in response to temperature and a model bacterium
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Unusual regulation of the CO2 concentrating mechanism of marine chemolithoautotroph Thiomicrospira pelophila
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … of organisms, and new views of how nutrients cycle through ecosystems. Of course, some of those collaborators, like …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … scheme to better define the genomic information and ecosystems. These curated data are accessible on JGI data … of Energy operated [DE-AC02-05CH11231]; National Energy Research Scientific Computing Center, which is supported by …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … (metabolizing) methane within the Florida Everglades ecosystem. There are no roads or real human traffic through … able to receive training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified …
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Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group
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Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments
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Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade
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Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements
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