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JGI & KBase at PAG XXVII
… place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  … to apply for a project with the JGI Community Science Program, and how you can use the KBase system to accelerate your … Transcriptome Changes during Leaf Senescence in  Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for …
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Decoding Yellowstone’s Microbial Mats
… it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, …
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Emiley Eloe-Fadrosh
… stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. Cohort-based learning for … standards. Nat Microbiol . 8(5):751-753. Nayfach A, et al. 2021. A genomic catalogue of Earth’s microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. Wood-Charlson EM, et al. 2020. The …
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Matt Blow
Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living … Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene … of bacterial genes of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in … Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its …
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Natural Prodcast Episode 3: The Primer, Part 3
… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … and you’re about to listen to the 3rd and final part of Natural Prodcast’s “Primer” episodes. This IS the third part, … making it to market and they wanted to keep that trend the same. But as you see, the number of new natural product …
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JGI Scientists Pen Genome Watch Articles
… and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome … email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea Du Toit, …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
Mitchell (Neochromosome) have worked to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international collaboration, with some artistic endeavors along the way. …
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New Research Sheds Light on Diversity in the Deep Sea
… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too deep in … and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how … function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … of Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European … and the National Natural Science Foundation of China (32022006) to S. Cheng and from the URPP Evolution in Action of …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, … National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic …
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