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10 From JGI on the 2019 Highly Cited Researchers List
… established community gardens of switchgrass plants in 10 different field sites on a north-south gradient across the … (GSC), and the International Committee on Taxonomy of Viruses to outline the minimum amount of information for an …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … that some of these genes have moved from the mitochondria into the nuclear genome over evolutionary time. They also … the kingdom, the genomes that carry them were strikingly different in both size and organization: Mitochondrial …
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Niche differentiation is spatially and temporally regulated in the rhizosphere
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JGI on the 2021 Highly Cited Researchers List
… colleagues used an extensive JGI database to investigate viruses detected in the samples. Simon Roux co-organized the … on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and functionally explore …
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Virus-Microbe Interactions of Mud Island Mangroves
… I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … wetlands.” A chapter of Rambo’s research focuses on how viruses influence carbon cycling in coastal mangroves. His … school plans. “The SCGSR gave me some great insight into my career path,” he said. “I much preferred the …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was part of  the initial release the genome … back in January of 2020. His work has also yielded insights into the origin and spread of viruses like dengue, Ebola, hepatitis C, HIV, influenza, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … and large-scale data analysis to better characterize how viruses infect soil microbes and influence how soil …
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DNABERT-S: pioneering species differentiation with species-aware DNA embeddings
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Access to Rock Star Scientists
… Merced JGI Mentors : Tanja Woyke & Jessica Jarett, Single Cells Group “My experience at JGI has exposed me to the …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… how much help can users expect for data analysis of the different omics analysis? Are users expected to be trained to handle the huge amounts of data for each of the different analysis? A:  We go from sample submission to data …
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A Collaboration to Improve Plant Genome Annotations Across Species
… include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq … sets, such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger and … more plants are studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing …
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