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Sequencing Technologies
… and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has … Six Sigma practices to process optimization and development approaches, testing various platforms to see what works best …
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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Expanding Virophage Diversity
… virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … environmental samples. Even traditional cultivation approaches applied to relatively tractable samples like …
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Understanding Wildfire Recovery, Starting in Soil
… and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the soil. … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National …
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Viruses Reprogram Cells into Different Virocells
… changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … Ohio State University’s Matt Sullivan used an experimental approach with a marine phage-host model to study … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder … exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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