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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of … and in your data, and they’re probably influencing the microbes there,” said Simon Roux , the Viral Genomics Group … do anything with a microbiome — you know, target specific microbes or change the behavior of this bacteria — most …
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SIPs with Standards
… microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're …
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Year in Review: JGI’s 2018 Progress Report Available Now
Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, and viruses vastly outnumber the microbes. Advances in sequencing technologies and … that infect not just crops, animals and humans, but also microbes whose presence or absence can impact the planet’s …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… of bacteria with diverse metabolic activities. Found in marine and terrestrial environments, actinobacteria play … strains are collapsed, while these issues are not commonly seen with reference isolates. “For secondary …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… activities. Aside from being a key component of the marine food web base, they also feature in many nutrient …
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Boosting Small Molecule Production in Super “Soup”
… of the study’s senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the … Additionally, the team also used a similar rewiring strategy to produce the small molecules glycerol and …
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JGI Accepts 17 Proposals for Community Science Program
… dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper … colleagues are studying how chronic warming is altering how microbes interact with their environment, potentially …
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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
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Game On: High School Students Drive Everglades Metagenomics Study
Acidobacteria, and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil … four sites tested.  They found Euryarchaeota to be the most common phylum of Archaea.  Alpha/Beta diversity tests showed …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms …
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