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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … Science user facility at Lawrence Berkeley National Laboratory (Berkeley Lab), is to become the leading integrative …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an … algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In 2019, the …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be … details become available. Sign up for our newsletter to receive updates.    … Stefani Ferreira , JGI Administrative and Logistics Support  …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI … Analyses for Bioprospecting in the Green Lineage using KBase 6:51 PM Evolution of Sex Chromosomes in the Moss …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … that showcase our collaborations and capabilities to enable great science that will help solve energy and … tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by … . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by … and discuss some of the current challenges faced by those using metagenomics to try to understand the far-reaching …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … This work was supported by the U.S. Department of Energy Office of Science under …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … host organism. With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among … production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … the shrub willows through the  Community Science Program , using long-read sequencing to assemble the repetitive areas …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … at least 15 zealexins, they suspect there are even more to find. Zealexins are produced in every corn variety and … was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for sesquiterpenoids, National Science …
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