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Plotting a Model for Virus-Host Warfare Deep Below Ground
… and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … “The Lord of the Rings,” the Hornburg fortress had withstood all attacks – until the Battle of Helm’s Deep. The … then burst, spreading the virions out and moving the carbon within the microbial community. These findings also suggest …
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Webinar: PhycoCosm Tutorial
… not sequenced by JGI, if PIs are interested are working with us please contact me at [email protected] 5.  Q: If … is based on a model that is not based on a genome model with PhycoCosm, how do we go about getting it in your … two calls for proposals are open right now – large scale CSP and FICUS with March 24 and March 17 deadlines. …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the … at once — rather than cultivating a single microorganism within a lab setting.  Roland Hatzenpichler is an associate …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. … cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … bacteria instead go through a boom and bust cycle aligned with light availability. A long-running time-series study … of carbon and other nutrient cycles on a global scale. Summary Ace Lake, located in the Vestfold Hills in …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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User Advisory Committees
… we nurture in our workplace and seek to establish with our stakeholders. The guiding principles for … community, and promotes communication and collaboration within the user community. … management and strategic objectives of the microbial and metagenome programs. The committee serves as the program's …
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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … Roux. “The machine learning approach allows you to quickly scale up once you’ve found the right features that you can …
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SPRUCE-ing Up Science
… Oak Ridge, Tennessee. Recently, Lawrence, in collaboration with researchers from ORNL, Lawrence Berkeley National … internship and investigations began.    Lawrence was paired with program co-founder and JGI mentor, Zhong Wang. … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Fungal & Algal Program
… and biogeochemistry. The program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic … carbon management, and environmental sustainability. Fungi, with million species, are essential for ecosystem … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or …
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Natural Prodcast Episode 1: The Primer, Part 1
… metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long history, and that’s what we’re going to be … lots of great conversations that we’ve already recorded with some excellent scientists, and that’s probably how …
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