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Comparative and pangenomic analysis of the genus Streptomyces
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A Guide to Gene‐Centric Analysis Using TreeSAPP
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … and her team are building on this discovery to address a wide range of new questions — from basic research, like … work paved the way to move beyond a single case-study, the reference genome, to something that represents all of the …
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Fungus Fuels Tree Growth
…     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … like growth rate. Harnessing that power could help usher widespread use of biofuel as a replacement to fossil fuel. …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … across genomes also provided an opportunity to assess commonalities. The enzymes that Lentinula fungi rely on to decay wood were widely conserved across species. Specifically, many species …
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Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Alliance for Minority Participation (CAMP) program, a statewide initiative funded by the National Science Foundation … the difficult early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Tracking the Origins of Methane-Producing Microbes
… and CO2-reducing, or hydrogenotrophic (most common); methylotrophic; and, acetoclastic. All three … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … and Verstraetearchaeota lineages. The archaeal genome was detected in samples collected by Stephen Quake’s …
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