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Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Boosting Small Molecule Production in Super “Soup”
Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … but, that was not a known fact in the field whatsoever.” Focusing on Carbon Flux and Future Directions The team reported … through this technology.” “This is a fantastic example of rapid-prototyping systems for metabolic pathways that we …
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JGI@25: From Life at the Extremes to Editing Genomes
… ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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JGI Announces 2025 New Investigator Portfolio
… a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will … such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant interactions … are accepted year-round for this ongoing call; the next deadline for proposal submission is Sept. 9, 2025, for …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … confirm the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds … User Facilities , with the stroke of a single proposal. The next step for the team was to try to identify what natural …
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Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … 4. Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … (uM etc).  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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