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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… team was investigating. So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and … roots). The team collected samples from these habitats. The proteins in the samples were then isolated and sequenced by … Northwest National Laboratory. Analyzing the collection of proteins (the proteome) and referencing the database, …
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JGI@25: The Little Alga That Could
… sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched … within Chlamy, meaning that its RNA can produce up to four proteins, which has far-reaching implications. “This is …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was part of  the initial release the genome … has also yielded insights into the origin and spread of viruses like dengue, Ebola, hepatitis C, HIV, influenza, … what is called the “virus field,” or the totality of viruses in the universe. He pointed to significant gaps in …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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CRISPR-resolved virus-host interactions in a municipal landfill include non-specific viruses, hyper-targeted viral populations, and interviral conflicts
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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