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A Plant Root Atlas for Tracking Developmental Trajectories
… with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting … Primary Template-Directed Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA … that is desirable in the microbiome field due to its high recovery of single-cell genomes. This is key to better …
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Yasuo Yoshikuni
Dubinkina et al., A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis … and production of phenazines using a multi-chassis approach via CRAGE., Metabolic Engineering , 2022 Ke et al., … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables isobutyl acetate production directly from cellulose by Clostridium thermocellum at elevated temperatures
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … fungi, given that the intricate flagellar apparatus is highly unlikely to regain once it is lost. Depending on the … ecosystems exposed fungi to numerous new ecological niches and triggered rapid diversification of the early …
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Trent Northen
… how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Testing the kinetic tradeoff between bicarbonate versus phosphoenolpyruvate affinity and glucose-6 phosphate response of phosphoenolpyruvate carboxylase from two C4 grasses
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Stimulation of dissimilatory sulfate reduction in response to sulfate in microcosm incubations from two contrasting temperate peatlands near Ithaca, NY, USA.
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The Power of One, Amplified
… value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic … BC Parks). In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The … more ideas, similar to the sharing of genes within a highly recombining microbial population. This work showcases …
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