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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested … along with the pool of genes considered the flexible genome content that was likely acquired due to gene transfer …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals … JGI, TSRI and the University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … reference genome, BTx623 for the third time, this time aligning it with over 50 other diverse sorghum genomes. Deep …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and … fungi are breaking down plant fibers, like cellulose and lignin. Bacteria, on the other hand, appear to be ignoring …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. … looking at: the role viral infection may play in other natural ecosystems. The video complements a recently …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Since then, IMG/VR has grown exponentially. The latest release, IMG/VR v4 features over 15 million viral genomes, …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … to over 2.4 million viral genomes available in the latest release of IMG/VR . CheckV is freely available for download … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  … In short, the complexity of nutrients, constraints, etc. of natural environments shape specific genomic signatures that … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than … Hrr. lacusprofundi  were directly transferring cytoplasmic content to Nanohaloarchaea. Using flow cytometry, the team …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … that’s a good niche market for soybean.”  Upon its initial release in 2009, the soybean genome sequence immediately … Glycine max on Phytozome …
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