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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… as the climate warms. However, these are complicated interactions to untangle. Fungi work in cooperation to … and Environment (INRAE). Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples … “In the next few years, I think we will have a kind of global map of the fungal diversity, but we are still missing …
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Construction of lactic acid overproducing Clostridium thermocellum through enhancement of lactate dehydrogenase expression
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Identification, Heterologous Expression, and Characterization of the Tolypodiol Biosynthetic Gene Cluster through an Integrated Approach
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Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii
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Astrovirology: how viruses enhance our understanding of life in the Universe
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Synthetic Biology Informatics Group
… methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as …
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Graduate Students Get Thesis Research Opportunity at the JGI
… selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 … of microbial communities in wetland carbon cycling and the interactions of plants with their associated microbiomes. … of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in coastal mangroves. The work …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… SIP experiments. “I’m looking forward to seeing that come through, predicated on these data standardization efforts — … with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in Berkeley.  Organizing this workshop, … will help grow and improve high-quality datasets, enabling global insights from modeling, machine learning, and …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Accelerating Metagenomics Discoveries with Deep Learning
… deep learning, a branch of machine learning, data is passed through algorithms organized into multiple interconnected … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Doubling Down on Known Protein Families
… novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring … a specific environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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