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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Congratulations to Tanja Woyke, who has been awarded the van Niel … of microbiology and is awarded on the recommendation of a panel of experts of the International Committee on … nearly 30 major previously uncharted branches of the tree of life. A senior scientist at Lawrence Berkeley …
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Axel Visel
Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in multicellular … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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Pelagic metagenome-assembled genomes from an estuarine salinity gradient in San Francisco Bay.
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Zhong Wang
Research in the Analysis R&D group focuses on developing new … customized data analyses and software to enable “grand-scale” scientific projects. These solutions include large-scale genome variants analyses, next-generation transcriptome de … metagenome binning software … Education … Selected Publications … Software …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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