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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users … and capabilities of both the JGI and the Environmental Molecular Science Laboratory (EMSL) at Pacific Northwest …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … category Computational Genomics Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf … and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs Deputy …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … viruses with an expanded complement of translation system components. Science 356, 82-85. Tsementzi et al. 2016. SAR11 … User Programs … Education … Awards and Service … Selected Publications …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning and sharing concepts, tools and … of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and Rekha Seshadri. …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … about how microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … group of decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest …
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JGI & KBase at PAG XXVII
XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … of topics related to structural biology, single cell and systems biology, omics, and big data science, machine …
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