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Evolution of copper arsenate resistance for enhanced enargite bioleaching using the extreme thermoacidophile Metallosphaera sedula
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Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Microbiome engineering for sustainable agriculture: using synthetic biology to enhance nitrogen metabolism in plant-associated microbes
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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Introducing New Members of the JGI User Executive Committee
… User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already … (UC) San Diego, being on the UEC is an opportunity to help develop the JGI’s community outreach efforts with diversity, … equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at France’s Centre National …
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Boosting Small Molecule Production in Super “Soup”
… for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth … Cell extracts provide an alternative format for chemical synthesis in the absence of cell growth by isolating the … are partnering with  Yasuo Yoshikuni and  Ian Blaby of the  DNA Synthesis Science Program . “This collaboration brings …
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Trent Northen
… Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … School of Business DOE Oppenheimer Science and Energy Leadership … Treen D, et al.  SIMILE enables alignment of tandem mass spectra with statistical significance. SIMILE …
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JGI@25: The Little Alga That Could
… hundreds of genes uniquely associated with carbon dioxide capture and the generation of biomass, making … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … Chlamydomonas has this related protein that’s also causing DNA damage,” Merchant said, “that something is wrong with …
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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