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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … Laboratory (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using … at these gardens. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs)—the  Great Lakes …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … detected in the Washburn sediments and based on metabolic reconstructions, the team has two main hypotheses: the novel …
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j5 DNA Assembly Design Automation
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … life.  These led to highly detailed assemblies for three strains of  Zygnema circumcarinatum . Published  May …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … are in their biomass, because that affects the quality of the food of these invertebrates that we use as …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  …
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … Schulz, Abergel and Woyke summarize insights from three decades of work on giant viruses. Isolating and … viruses in sequence data is read-mapping: using giant virus reference genomes to search for giant viruses in metagenomic …
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Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: …
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