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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can get those working,” Cole said.  …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, …  under PNNL’s Soil Microbiome SFA, which aims for a systems-level understanding of the soil microbiome and its …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s … is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for … survive in very hot, high-pressure and chemically-rich ecosystems. This means they hold clues for understanding how … that could potentially be applied to biotechnology and medicine. A more robust understanding of these microbial …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the … bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, … genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Maureen Berg
Maureen is currently developing new high-resolution and … these new methods, she hopes to expand our understanding of the roles that viruses play in their ecosystems, particularly in freshwater ecosystems. …
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