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Forming Scientific Connections and Building Community
… DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …
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Tracing the Evolution of Shiitake Mushrooms
… often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Honey Bee Gut Microbiota Divvy Up Dinner
… in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …
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Doubling Down on Known Protein Families
… Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel … the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is …
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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Secondary Metabolites Advisory Committee
… guidance, and counsel on the effective management and strategic objectives of the programs. The Committee serves as … operations, and scientific relevance and quality. The SMAC does not perform management functions nor do they direct the Program's …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… below, captions are available) spotlighted the metabolomic analysis capability available through the  Community Science … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics … a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing …
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