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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … few species like Arabidopsis or rice as homology models for computational function predictions and also due to the …
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JGI announces final round of 2022 Functional Genomics awardees
… Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. …
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DOE JGI Interns Share Their Summer Experiences
… summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … out in the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … calls, users can combine EMSL’s unique imaging, omics and computational resources with JGI’s cutting-edge genomics, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA Synthesis Science … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis grant during a presentation that [DNA Synthesis Science Head] …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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Viruses Reprogram Cells into Different Virocells
… reprogramming. The Science If it looks like a duck and quacks like a duck, so the adage goes, it must be a … it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … Ohio State University’s Matt Sullivan used an experimental approach with a marine phage-host model to study …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce biodiesel. … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … by genome sequencing, which is a much less biased approach to studying nature. That’s the real power of … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Dispatches From JGI Interns
… JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, impactful research … interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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