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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific … Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an … atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … The Secondary Metabolites Program targets the vast and underexplored …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Congratulations to Tanja Woyke, who has been awarded the van Niel … techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , …
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Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in … of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, under contract no. …
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