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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Learning to Look
… July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a … result of this hidden diversity of inoviruses now overhauls our perception of this virus group – from minor curiosities …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria and fungi have genes that can break … proteins in the samples were then isolated and sequenced by scientists at the Environmental Molecular Sciences …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging …
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Joe Ecker
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and compute … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — … secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … is a long and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live … HT-SIP is a capability available to request through  the JGI proposal calls . …
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Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
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Functional genomic screening in Komagataella phaffii enabled by high-activity CRISPR-Cas9 library
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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … to create pipelines, tools and other standardized data resources that the global research community can access and use … These advanced computing capabilities meet the needs of scientists out in the field, and developing such tools has …
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