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… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … (ORNL) to make sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t … we need to keep pace with changes in industry/DOE Advanced Scientific Computing Research (ASCR) facilities. It’s a …

… exchanging ideas, forming collaborations, and charting the future of microbiome science. Organizers The EcoFAB 2025 …

… features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a … being conducted through the  Belowground Biogeochemistry Scientific Focus Area (SFA), supported by the Terrestrial …

… Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics … to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein … NIH NRSA Postdoctoral Fellowship (F32), 2012 – 2015 Bright Futures Academic Scholarship, 2002 – 2006 HCA Foundation …

… The course had a defined set of objectives, and started with an image of a spoonful of dirt with the question: Do … as a class, the students learned about how to write a scientific paper. They wrote, edited, and rewrote a … students now feel more empowered and equipped for their future research endeavors.” The students were able to do …

… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … work also used resources of the National Energy Research Scientific Computing Center (NERSC) , which is supported by … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …

… Panicum hallii genomes offer insights to drought tolerance. The Science … ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has … HAL2 and FIL2 genomes on Phytozome Data portal …

… some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … Lawrence Berkeley National Laboratory’s Sustainable Systems Scientific Focus Area funded by the US Department of Energy …

… biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis …

… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more …

… and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics … Publications … Selected Publications …

… a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … for selection to improve biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy … when switchgrass (and by extension similar taxa) are faced with pronounced environmental fluctuations. New findings …