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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus … viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic …
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Synthetic biology open language (SBOL) version 3.0.0
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … the structures and functions of the genes encoded in the genome sequence is part of the integrative science mission … their functional interpretation is as tough as it has been 10 years ago,” he said. “We thought about reconstructing …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… genes. The data from that study is now used across California State University campuses for biotechnology …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like … binding maps for 360 transcription factors across 10 plant species, illuminating thousands of regulatory …
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Frequently Asked Questions: Project Management
… listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also … following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the … University of Thessalonica (Greece), and the University of California, Berkeley were also involved in the work. Other …
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