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… to create genomics-enabled insights into a vast range of organisms and ecosystems. These kinds of data could open opportunities … a half, Visel drove the effort, comprised of holding JGI-internal leadership and planning workshops, as well as …

… microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator Michelle … has worked with the JGI to understand the enzymes these organisms use to bust biomass apart. She and her team find … a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and …

… learns to recognize patterns, structures and relationships within the data — similar to the way LLMs learn grammar and … efforts to build predictive models for the behaviors and interactions of complex systems.  One of its key innovations …

… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … completeness and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from … flanked on one or both sides by genes from the host organism. With the virus-host boundary clearly defined using …

… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … is that we’re doing work in yeast, a key platform organism that has been used historically for making … lab to provide a seamless transition between the in vivo (within the cell)and in vitro (outside the cell) efforts of …

… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … students from UC Merced through their long standing internship program. In just two months, the students … distachyon root transporters in plant-microbiome interactions ” Cory-James Pugne-Andenoro : “The best part of …

… — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like bacteria, algae and … invisible to the sampling experiments probing Earth’s ecosystems. Viruses rarely grow well in environmental … was called IMG/VR. It featured samples from different ecosystems all over the world, including 3,908 isolate …

… Matt is broadly interested in the interactions between microbial life and environment, and … considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and FICUS user …

… desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean shores. Their … our planet’s nutrient cycles are regulated, and the ways organisms can adapt to climate change and environmental …

… in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal …

… learned how an inovirus’ strategy of integrating itself within a host can lead to beneficial or antagonistic interactions with other co-infecting phages and with the …