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David Goodstein
With a background in experimental and computational surface … equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, …
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Tina Clarke
… (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions and appropriate actions on … Psychology from Sonoma State University. Early on Tina knew the importance of understanding human and group behaviors …
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The More the Merrier: Making the Case for Plant Pan-genomes
… three or more genome copies from additional parents or duplication, also known as “polyploidy,” is common among … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …
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Viruses Reprogram Cells into Different Virocells
State University and the University of Michigan studying how virus infections cause significant metabolic changes in … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … they sharply delineated into two big geographical groups: those in colder, polar waters, and those in warmer, …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of … belong to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. The expansion of the diversity for large and … mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, …
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Cultivating Symbiotic Antarctic Microbes
Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … Aenigmarchaeota, Nanoarchaeota, and Nanohaloarchaea) superphylum of extremophilic archaea first outlined by JGI …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've sequenced, …
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