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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … and currently leads the Viral Genomics group at the JGI to further explore the ecological and evolutionary …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … has a number of applications, including pain relief. The microbes in cone snails may be involved in venom activity, … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the …
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All Events
… The JGI is represented at conferences year round; find out where …
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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… dark matter”–that uncultured and unknown majority of microbes in, on and around the planet–through techniques … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American Academy of Microbiology (AAM). She has led JGI’s Microbial Genomics Program since 2009 and heads the …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab created a …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … measure the collection of the microbiome’s genetic makeup. Microbes have specific tetranucleotide frequencies, and an …
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … It also underscores the untapped potential waiting to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an immune …
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Defining a Pan-Genome for Antarctic Archaea
… and researchers are interested in learning how these microbes have learned to adapt from marine to hypersaline … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature … advantage of their joint metabolisms. Because, together, microbes can be used to create compounds more efficiently …
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