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How genomics can help unravel the evolution of endophytic fungi
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To … zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of …
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Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages
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Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments
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Metagenomes from two microbial consortia associated with Santa Barbara seep oil
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Diversity and Distribution of Hydrocarbon-Degrading Genes in the Cold Seeps from the Mediterranean and Caspian Seas
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … needing to cultivate the microbes in the lab,” noted Stephen Nayfach, the study’s first author and research …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … portal for mitochondrial ribosomal RNA sequences. The next step applied metagenomic binning (grouping sequencing reads …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying … anaerobic fungi, as well as a recent discovery that turns scientific presumption on its head and opens up a new avenue …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 … lab describes the effort that led to the work published in Scientific Reports . Before 2006, Olpidium was one of the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready … with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … phylogenetic frameworks spanning the entire kingdom. Stephen Mondo, a research scientist with the JGI and …
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Evidence of Asexual Overwintering of Melampsora paradoxa and Mapping of Stem Rust Host Resistance in Salix
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