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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid genome evolution revealed by a … et. al. 2017 Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant Journal …
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Busting the Unbreakable Lignin
… to be impossible.  And yet, little chemical clues left some researchers wondering if perhaps the accepted narrative … than presumed. After all, they’re able to produce enzymes highly efficient at making use of those other two … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and evolution of the … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to … for TPS genes in C. citriodora . They then compared the list of putative genes from C. citriodora to known TPS gene …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for … Berkeley National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the …
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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
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High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM 18169T) from chicken caecum
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The Surprising Structure of a Shrub Willow Sex Chromosome
… (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers need to select and breed cultivars for the next … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … sex chromosome. Palindromes are large inverted repeats with highly similar sequences so that their sequences read the …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … metagenome assembly for a time-series experiment from the highly-studied Lake Mendota is told as part of a three-part …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … school.  The interns from this cohort and their respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk … Python, um, from the week long Python workshop. And I’m excited to take that with me, along with other tools that I …
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High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway
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