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Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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Thermus sediminis sp. nov., a thiosulfate-oxidizing and arsenate-reducing organism isolated from Little Hot Creek in the Long Valley Caldera, California
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … in particular, as a model system for venom-microbe interactions. Cone snail venom has a number of applications, … Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the foundation for her graduate work. “Being a …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … of the global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. … S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global metagenomics. Nature . …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … relying on different ways of living. The Impact Microbes help regulate the global carbon cycle — fixing, …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … investigating a lichen’s genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, … you to reach out and share your thoughts — they’ll help us build a solid knowledge base that may inform future …
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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