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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … stories, told through print narratives, videos, a podcast episode, and presentations below. … … … … … … … … … … … … … … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on …
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Exploring the Diversity of the American Prairie’s Switchgrass
… potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single largest … capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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Dispatches From JGI Interns
… real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … specifically to generate biofuels,” Hess said.  (Only 90 of those genes were actually tested in the 2011 paper. In … data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has shifted …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s … Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering …
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