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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… for outstanding achievements in science, technology, and diversity/inclusion by the annual  HPCwire Readers’ and … community moving forward and to assemble, for the first time these large environmental  microbial data sets for JGI … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … a joint research call. Submitted proposals addressed one of the following focus topic areas: Biofuels and … features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, …
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Picking Up Threads of Cotton Genomics
… crops. Additionally, cotton is almost entirely made up of cellulose and it is a fiber model to understand the … disciplines that relate directly and indirectly to genetic diversity, evolution, wild germplasm utilization and … from this high impact science for years to come,” said Don Jones, who handles variety improvement for  Cotton …
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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
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Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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JGI@25: The Little Alga That Could
… and environmental challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. … was sequenced and published in the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the … JGI shows that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of … Find more details on the instrumentation we use and our methodology for …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … In order to do so, these organisms share space at cellular scale: fungi stretch a network of tendrils called … close, using RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … and molecular characterization capabilities in just one research proposal. Guest speaker Michelle O’Malley of UC … will be competitive. Q:  Can you elaborate on the single-cell genomics capabilities? A:  EMSL’s capabilities include …
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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… aren’t interested in waiting decades to develop new crops. One example is an ongoing collaborative effort to improve … customize the crop for additional end products. The genetic diversity within this set of plants, each with a … ago with a proposal from UT-Austin’s Tom Juenger, a longtime JGI collaborator and a senior author on this study. The …
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