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… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

… the different market classes of beans.” … P. vulgaris on Phytozome … Plant Datasets …

… sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Phakopsora pachyrhizi on MycoCosm Data Portal …

… be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … of Setaria viridis is available on JGI’s plant portal Phytozome .  Researchers from the RIKEN Center for … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be … for funding L.A. … Arabidopsis thaliana on MycoCosm data portal … Differentiating friends from foes in the …

… within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …

… with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data with …

… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … are often less diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was …

… so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care …

… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …

… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …