Search

… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with large and … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …

… is working on the display and visualization of large omics data. …

… within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …

… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial …

Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

They are abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search for and …

… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …

… mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … microbiome science through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: …

… how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …

… and combining the information with previously published datasets. The work was  recently published in the journal  … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on …