Search

… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … are often less diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was …

… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …

… within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …

Sphagnome data would enable researchers’ insights on their potential … Environments) project, assessing how northern peatland ecosystems respond to increases in temperature and elevated … the Joint Genome Institute supported by the Biological Systems Science Division and the  Spruce and Peatland … (research grant 15510). … Sphagnum fallax on Phytozome … Datasets …

… find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with large and … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …

… is working on the display and visualization of large omics data. …

… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental … access to these viral genomes. The new database was called IMG/VR. It featured samples from different ecosystems all …

… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …

… mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … microbiome science through standardized fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: …

… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …

… how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …