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Fungal Friends or Foes in Plant Roots
… office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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iPHoP: A Matchmaker for Phages and their Hosts
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …
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JGI announces second round of 2023 New Investigator awardees
… Felipe Valdez-Nuñez  The JGI is eager to work and share our tools with a widening circle of researchers. That’s why …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… to the Facilities Integrating Collaborations for User Science (FICUS) Call Karolina Michalska , Advanced … or experimental design, contact  Tanja Woyke , Deputy for User Programs. EMSL : Contact EMSL User Program Services … We work with start-ups and mature companies, as long as the data are not proprietary.  Q3: What are the acceptable …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …
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A Step Toward Controlling Soybean Rust
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … Phakopsora pachyrhizi on MycoCosm Data Portal …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Gut Fungi: Unexpected Source of Novel Chemicals
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Sciences Laboratory (EMSL), a DOE Office of Science user facility at Pacific Northwest National Laboratory. The … natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. …
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