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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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FICUS Overview
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… candidate biomass feedstock for producing sustainable alternative fuels. Common Gardens Are A Community Effort The … fully understand that when you move plants outside of their native habitat or cold hardiness zones, they have different … environments. For example, many plants collected from native habitats in Texas and other southern locales did not …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… to reliably match viruses with their archaea and bacteria hosts.  Jeremy Schmutz’s 2023 published work … Grigoriev’s recent work includes the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant … new genomes highlighting the diversity of white rot fungi in the genus Lentinula. Dan Rokhsar looked to the …
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Workforce Development & Education Outreach
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Evolution of a Fungal Gene Expression Regulator
… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … they regulate their genomes, but is not well understood in fungi. A team of researchers reported on the largest … tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants and fungi run …
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Simon Roux
… prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome … Researcher (Cross-field), 2020 LBNL Early Career LDRD, 2018 Senior Editor: Microbiology Resource Announcements … …
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Katherine Louie
BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc … in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen BP, McAlhany S, Huang Y, …
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … microbiomes. Tringe was also Kaze’s mentor during her 2018 internship, in which she explored anthropogenic impacts …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of defense … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … the fern’s defense-related gene families were snatched from bacteria. The insertion of transposable elements — also …
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