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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving … to work with that vast amount of data is something that has been really exciting to be able to learn how to do. …
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A thermostable Cas9 with increased lifetime in human plasma
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JGI Workshop at SIMB NP Meeting
… of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious … Institute (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics capabilities …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … signatures reveal a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, … tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, 563. May D, Blow MJ, Kaplan T, McCulley DJ, …
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Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … innovative and impactful analysis of microbiome data that has changed our understanding of the microbiome and the …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science … designed to attract specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the … this microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form …
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Year in Review: JGI’s 2018 Progress Report Available Now
… highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda … by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and to … Reports. Print copies will be available the annual JGI Genomics of Energy & Environment Meeting in San Francisco …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program. … JGI Community Science Program collaborators, and UC Merced has many talented graduate students working in genomics and …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. …
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Viral dynamics in a high-rate algal pond reveals a burst of Phycodnaviridae diversity correlated with episodic algal mortality
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