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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa … metric tons . The global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . …
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Leadership
… the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to the JGI Director. …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… a combination of sequencing tools and techniques applied to samples collected from acidic iron-oxide microbial mats in … and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The … into the evolution of life on Earth. For decades, longtime JGI collaborator Bill Inskeep of Montana State University …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … at Lawrence Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user … Over time, MGEs can help microbes gain a competitive edge within an ecosystem. They influence the composition of the …
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Steven Wilson
… applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … Wilson brings a user-centered approach, an ability to work with others to break down complex issues into achievable … Department to develop software that pushed instrument run information directly into the database rather than depending …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science … security. In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries … of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community of postdoctoral and …
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific … validated bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Viruses Reprogram Cells into Different Virocells
… outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … part of efforts to characterize global microbial diversity with an aim to improve predictive ecosystems models, … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … University describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Partners
… The JGI leverages its existing partnerships and develops others … as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our … to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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