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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… systems target infectious agents like viruses and plasmids. First,  Ca . Altiarchaeum had CRISPR-Cas systems … Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National … Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: …
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From Textbook to Real World Applications
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … mat, the virus-to-host ratio for most pairs was close to 1. Even the most abundant virus was only 11 times more abundant than its host. There just don’t seem …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program … gradient from the Fox permafrost tunnel near Fairbanks, Alaska. (Courtesy of Mary-Cathrine Leewis) Samples were … gradient from the Fox permafrost tunnel near Fairbanks, Alaska. (Courtesy of Mary-Cathrine Leewis) This year’s annual …
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Frederik Schulz
Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … and surveillance in complex samples. … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, University of Vienna (Austria) PhD Microbial Ecology and …
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JGI & KBase at PAG XXVII
Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … maximum of six teams will be hosted at the Hackathon, with 1-2 mentors per team. Participants will be expected to have …
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Waiting to Respire
… to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … (Pactolus). … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, Arizona State University … 1. Swift CL, Louie KB, Bowen BP, Olson HM, …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory … Science” (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply … genomics capabilities? A:  EMSL’s capabilities include laser capture microdissection, single cell sorting and …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … in a pan-genomic context. … BS in Plant Science, Cornell University, NY; PhD in Biology, University of Illinois at Chicago, IL Postdoctoral training, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. … shows how, from a single bacterial cell (seen here in a glass capillary), researchers sequenced and assembled the …
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