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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … Corresponding author Ivanova said that the JGI continues to work along the lines of increasing genomic representation of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … and commodity chemicals, as well as drop-in biofuels. This work shows that anaerobic fungi might be a new source of …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that … Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (EMSL), a DOE Office of Science user facility. The work was partly enabled by the “Facilities Integrating …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … coauthor Lee did the initial development of a streamlined workflow that reduces the time and cost associated with this …
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Improving genome assemblies by sequencing PCR products with PacBio
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Complete Genome Sequence of Francisella philomiragia ATCC 25017
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Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber
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Hardwood Tree Genomics: Unlocking Woody Plant Biology
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