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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … willow is flipped: females are heterogametic. To avoid confusion with the mammalian system, the sex chromosomes are …
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Ian Blaby
… the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … a group lead at Brookhaven National Laboratory where he focused on functional genomics of phototrophs. Through this and … Frontiers in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling …
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A One-Stop Shop for Analyzing Algal Genomes
… an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the … microbes like bacteria, algae and protists, all kinds of viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are most likely in your system and in your data, and …
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John Vogel
… to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … areas of study span the research interests of the JGI’s user community.  Go here to view the current UEC roster. …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that will help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of … of years evolving tactics against potential threats. “Because plants can’t run away, they’ve evolved these really … that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole complex …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a …
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Waiting to Respire
… other than photosynthesis to gain and harness energy. As reported January 28, 2019 in Nature Communications , two … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common …
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Evolution of a Fungal Gene Expression Regulator
… but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC distribution across … the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar type of search in microbial and …
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