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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… all that it has contributed, and what they’re excited about in JGI’s future. Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s … to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! … reference sequence of the complex switchgrass genome , using samples from common gardens growing across the … involved researchers at the University of Texas at Austin, HudsonAlpha, and the JGI. Building off this work, …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of …
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Gotta Catch 'Em Gall
… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , … or uncached (archived) The ability to send yourself a calendar reminder to download restored files Copy-and-paste …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at … what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized hundreds of  …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms … circular capture areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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