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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, …
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Anna Ratner
… is working on the display and visualization of large omics data. …
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Neha Varghese
… analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … and Adam Healey, two of the co-first authors, led the data analyses and assembled the green millet “pan-genome” (a …
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