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Introduction: Sequences and consequences
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Frederik Schulz
… and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an organism’s … Center in Hungary. His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal …
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Learning to Look
… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … to those in typical bacterial or archaeal genomes, the sequence is most likely not an inovirus. But if these nearby …
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The Power of One, Amplified
For example, they showed that the composition of the community was similar across sequencing approaches, that … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of genomic sequences. A complementary approach to this is single cell …
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Cataloging the Microbes that Manage the Health of River Systems
… access points to the information. The team harnessed a community-science program to collect samples from across the … provides information at multiple scales from genes to the community level. The Impact Rivers are transport systems, … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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The More the Merrier: Making the Case for Plant Pan-genomes
Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference … grasses. With these datasets, researchers made a pan-genome containing four  B. hybridum  genomes and many  B. …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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The trajectory of microbial single-cell sequencing
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