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To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely on … processes both carbon and nitrogen. This research team combined computational and experimental approaches to look …

University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria … hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research …

JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the absence … species to answer questions about how they break down plant materials, which could be useful for industrial biofuel …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our … Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal … Goal = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, …

Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, … to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods … gRNA-SeqRET … BOOST … …

Program was brimming with excitement and determination as they came onsite. From data carpentry to science communications, their schedules were filled with trainings … Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns Tahirah …

… have led to an abundance of microbial genomes becoming available to the global research community.  … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … Ivanova leads the Functional Annotation team. MAGs significantly expanded the estimated diversity of Bacteria and …

… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … other crops facing similar pathogens. Summary Many plants, sugarcane included, are polyploid and have multiple … 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a genome has been …

Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … California-Baja coast and spots where they are most abundant are Monterey, San Diego, and Puerto Nuevo.” Ul-Hasan’s … I have today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall …

Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated …

Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus …